The Director of CERGE-EI and his Deputy Directors serve as the management board of the institution and are responsible for the day-to-day operation of the institution. In addition, each Deputy Director is directly responsible for his or her own department, while the Director bears responsibility for overall institutional management. The current Directors and Deputy Directors are as follows:

Doc. Ing. Stepan Jurajda, Ph.D.
Director of CERGE-EI

Prof. RNDr. Jan Hanousek, CSc.
Deputy Director for Graduate Studies

Ing. Jaroslav Nemec
Deputy Director for Finance

RNDr. Eva Cermakova, CSc.
Deputy Director for Administration

Prof. RNDr. Jan Hanousek, CSc.
Chair of the CERGE Scientific Council, Chair of the CERGE Graduation Council